ssMediation.VSMc.logistic {powerMediation}

Sample size for testing mediation effect in logistic regression based on Vittinghoff, Sen and McCulloch's (2009) method

Description

Calculate sample size for testing mediation effect in logistic regression based on Vittinghoff, Sen and McCulloch's (2009) method.

Usage

ssMediation.VSMc.logistic(power, 
                          b2, 
                          sigma.m, 
                          p, 
                          corr.xm, 
                          n.lower = 1, 
                          n.upper = 1e+30, 
                          alpha = 0.05, 
                          verbose = TRUE)

Arguments

power

power for testing b_2=0 for the logistic regression \log(p_i/(1-p_i))=b0+b1 x_i + b2 m_i.

b2

regression coefficient for the mediator m in the logistic regression \log(p_i/(1-p_i))=b0+b1 x_i + b2 m_i.

sigma.m

standard deviation of the mediator.

p

the marginal prevalence of the outcome.

corr.xm

correlation between the predictor x and the mediator m.

n.lower

lower bound for the sample size.

n.upper

upper bound for the sample size.

alpha

type I error rate.

verbose

logical. TRUE means printing sample size; FALSE means not printing sample size.

Details

The test is for testing the null hypothesis b_2=0 versus the alternative hypothesis b_2\neq 0 for the logistic regressions:

\log(p_i/(1-p_i))=b_0+b_1 x_i + b_2 m_i

Vittinghoff et al. (2009) showed that for the above logistic regression, testing the mediation effect is equivalent to testing the null hypothesis H_0: b_2=0 versus the alternative hypothesis H_a: b_2\neq 0.

The full model is

\log(p_i/(1-p_i))=b_0+b_1 x_i + b_2 m_i

The reduced model is

\log(p_i/(1-p_i))=b_0+b_1 x_i

Vittinghoff et al. (2009) mentioned that if confounders need to be included in both the full and reduced models, the sample size/power calculation formula could be accommodated by redefining corr.xm as the multiple correlation of the mediator with the confounders as well as the predictor.

Value

n

sample size.

res.uniroot

results of optimization to find the optimal sample size.

Note

The test is a two-sided test. For one-sided tests, please double the significance level. For example, you can set alpha=0.10 to obtain one-sided test at 5% significance level.

Author(s)

Weiliang Qiu [e-mail]

References

Vittinghoff, E. and Sen, S. and McCulloch, C.E.. Sample size calculations for evaluating mediation. Statistics In Medicine. 2009;28:541-557.

See Also

minEffect.VSMc.logistic, powerMediation.VSMc.logistic

Examples

  # example in section 4 (page 545) of Vittinghoff et al. (2009).
  # n=255

  ssMediation.VSMc.logistic(power = 0.80, b2 = log(1.5), sigma.m = 1, p = 0.5, 
    corr.xm = 0.5, alpha = 0.05, verbose = TRUE)