visualiseGIC {polyqtlR}

Visualise Genotypic Information Coefficient

Description

Function to visualise the GIC of a certain region

Usage

visualiseGIC(
  GIC_list,
  add_rug = TRUE,
  add_leg = FALSE,
  ylimits = NULL,
  gic.cex = 1,
  show_markers = TRUE,
  add.mainTitle = TRUE,
  plot.cols = NULL
)

Arguments

GIC_list

List of GIC data, the output of estimate_GIC

add_rug

Should original marker positions be added to the plot?

add_leg

Should a legend be added to the plot?

ylimits

Optional argument to control the plotting area, by default NULL

gic.cex

Option to increase the size of the GIC

show_markers

Should markers be shown?

add.mainTitle

Should a main title be added to the plot?

plot.cols

Optional argument to specify plot colours, otherwise suitable contrasting colours are chosen

Value

The phased map data for the specified region, recoded into 1's and 0's.

Examples

data("GIC_4x")
visualiseGIC(GIC_list = GIC_4x)