estimate_GIC {polyqtlR}

Estimate the Genotypic Information Coefficient (GIC)

Description

Function to estimate the GIC per homologue using IBD probabilities

Usage

estimate_GIC(IBD_list)

Arguments

IBD_list

List of IBD probabilities

Value

A nested list; each list element (per linkage group) contains the following items:

GIC :

Matrix of GIC values estimated from the IBD probabilities

map :

Integrated linkage map positions of markers used in IBD calculation

parental_phase :

The parental marker phasing, coded in 1 and 0's

Examples

data("IBD_4x")
GIC_4x <- estimate_GIC(IBD_list = IBD_4x)