check_marker_assignment {polymapR} | R Documentation |
Check for consistent marker assignment between both parents
Description
Function to ensure there is consistent marker assignment to chromosomal linkage groups for biparental markers
Usage
check_marker_assignment(
marker_assignment.P1,
marker_assignment.P2,
log = NULL,
verbose = TRUE
)
Arguments
marker_assignment.P1 |
A marker assignment matrix for parent 1 with markernames as rownames and at least containing the column |
marker_assignment.P2 |
A marker assignment matrix for parent 2 with markernames as rownames and at least containing the column |
log |
Character string specifying the log filename to which standard output should be written. If NULL (by default) log is send to stdout. |
verbose |
Should messages be sent to stdout or log? |
Value
Returns a list of matrices with corrected marker assignments.
Examples
data("marker_assignments_P1"); data("marker_assignments_P2")
check_marker_assignment(marker_assignments_P1,marker_assignments_P2)
[Package polymapR version 1.1.6 Index]