mcmcHexRun {polySegratioMM}

Results of MCMC estimation for simulated overdispersed markers

Description

MCMC was performed using the wrapper function runSegratioMM to run JAGS for a Bayesian mixture model on the segregation ratios obtained using the simulated data hexmarkers.overdisp. These data were simulated as 500 markers for 200 “auto–hexaploid individuals” exhibiting overdispersion with shape1=25. The underlying percentages of single double and triple dose markers are 70%, 20% and 10%, respectively.

Usage

mcmcHexRun

Format

An object of S3 class runJagsWrapper with various components including summaries and diagnostics.

References

Baker P, Jackson P, and Aitken K. 2010. Bayesian estimation of marker dosage in sugarcane and other autopolyploids. TAG Theoretical and Applied Genetics 120 (8): 1653-1672.