readVCM {plinkFile} | R Documentation |
Read Variant Count Matrix (VCM) accompanying a GCTA GRM
Description
GRM (Genetic Relatedness Matrix) is the core formt of GCTA, which is a PLINK binary symmetric matrix with an extra variant count matrix (VCM), this function reads the VCM.
Usage
readVCM(pfx, fid = NULL)
Arguments
pfx |
prefix of GRM file set |
fid |
seperate after family ID (def=NULL, use IID only) |
Value
matrix of variant count with sample ID in row and column names.
Examples
pfx <- file.path(system.file("extdata", package="plinkFile"), "m20")
(readVCM(pfx))
[Package plinkFile version 0.2.1 Index]