manhattan_plot {pleiotest}

Single Trait Manhattan plot

Description

Manhattan plot of results from mt_gwas function.

Usage

manhattan_plot(mt_gwas_results, trait, bp_positions, ...)

Arguments

mt_gwas_results

Object returned by mt_gwas

trait

integer indicating the position of the trait (see: names(mt_gwas_results)) to be plotted.

bp_positions

dataframe with SNPs base pair positions. colnames msut be 'chr' and 'position', rownames must be SNP identifiers matching names in mt_gwas.

...

further graphical parameters. Options include: title=, bty=, pch=, cex.lab=, and cex.main=.

Value

Manhattan plot