| plantTracker-package {plantTracker} | R Documentation |
Extract Demographic and Competition Data from Fine-Scale Maps
Description
Extracts growth, survival, and local neighborhood density information from repeated, fine-scale maps of organism occurrence. Further information about this package can be found in our journal article, "plantTracker: An R package to translate maps of plant occurrence into demographic data" published in 2022 in Methods in Ecology and Evolution (Stears, et al., 2022) <doi:10.1111/2041-210X.13950>.
Details
The DESCRIPTION file:
| Package: | plantTracker |
| Title: | Extract Demographic and Competition Data from Fine-Scale Maps |
| Version: | 1.1.0 |
| Date: | 2023-05-03 |
| Authors@R: | c(person(given = "Alice", family = "Stears", role = c("aut", "cre"), email = "alice.e.stears@gmail.com", comment = c(ORCID = "0000-0002-1325-6641")), person(given = "Jared", family = "Studyvin", role = c("aut"), email = "studyvin@uwyo.edu"), person(given = "David", family = "Atkins", role = c("aut"), email = "datkins8@uwyo.edu")) |
| Author: | Alice Stears [aut, cre] (<https://orcid.org/0000-0002-1325-6641>), Jared Studyvin [aut], David Atkins [aut] |
| Maintainer: | Alice Stears <alice.e.stears@gmail.com> |
| Description: | Extracts growth, survival, and local neighborhood density information from repeated, fine-scale maps of organism occurrence. Further information about this package can be found in our journal article, "plantTracker: An R package to translate maps of plant occurrence into demographic data" published in 2022 in Methods in Ecology and Evolution (Stears, et al., 2022) <doi:10.1111/2041-210X.13950>. |
| License: | MIT + file LICENSE |
| URL: | https://github.com/aestears/plantTracker |
| Encoding: | UTF-8 |
| LazyData: | true |
| Roxygen: | list(markdown = TRUE) |
| RoxygenNote: | 7.2.3 |
| Depends: | R (>= 2.10) |
| Suggests: | testthat (>= 3.0.0), knitr, rmarkdown, spelling, minidown, ggplot2 |
| Config/testthat/edition: | 3 |
| Imports: | Matrix, igraph, sf, methods, stats, graphics, grDevices, units |
| VignetteBuilder: | knitr |
| Language: | en-US |
Index of help topics:
aggregateByGenet aggregateByGenet
assign Tracks genets through time
checkDat checkDat
drawQuadMap Create maps of a quadrat over time
getBasalAreas Calculates basal area for each species in a
quadrat
getLambda Calculates lambda, the population growth rate,
for each species in a quadrat based on changes
in basal cover.
getNeighbors Calculates local neighborhood density around
each individual in a mapped dataset
getRecruits Calculates the number of recruits of each
species per year in each quadrat
grasslandData Chart Quadrat Dataset for grassland species in
MT and AZ An example dataset that contains data
from mapped plant chart quadrats. Each row is
an observation of one plant.
grasslandInventory A dataset indicating sampling years for the
grasslandData example dataset
groupByGenet Group polygon observations together into a
'genet' based on proximity
plantTracker-package Extract Demographic and Competition Data from
Fine-Scale Maps
trackSpp Tracks genets through time for multiple species
and sites
Author(s)
Alice Stears [aut, cre] (<https://orcid.org/0000-0002-1325-6641>), Jared Studyvin [aut], David Atkins [aut]
Maintainer: Alice Stears <alice.e.stears@gmail.com>
See Also
Use the following code to see the vignette will guide you through using the plantTracker package
vignette(topic = "Suggested_plantTracker_Workflow", package = "plantTracker")
Use the following code to see the vignette goes through the trackSpp() function step-by-step
vignette(topic = "Using_the_plantTracker_trackSpp_function", package = "plantTracker")