setMap {phytools}

Set color map for various phylogenetic objects of classes

Description

Changes the color map (ramp) in an object of class "contMap", "densityMap", "phyloScattergram", or "multirateBM_plot".

Usage

setMap(x, ...)
## S3 method for class 'contMap'
setMap(x, ...)
## S3 method for class 'densityMap'
setMap(x, ...)
## S3 method for class 'phyloScattergram'
setMap(x, ...)
## S3 method for class 'multirateBM_plot'
setMap(x, ...)

Arguments

x

an object of class "contMap", "densityMap", "phyloScattergram", or "multirateBM_plot".

...

arguments to be passed to colorRampPalette. Also, the argument invert which (if invert=TRUE) will just flip the current color ramp.

Value

An object of class "contMap", "densityMap", "phyloScattergram", or "multirateBM_plot".

Author(s)

Liam Revell [e-mail]

References

Revell, L. J. (2012) phytools: An R package for phylogenetic comparative biology (and other things). Methods Ecol. Evol., 3, 217-223.

Revell, L. J. (2013) Two new graphical methods for mapping trait evolution on phylogenies. Methods in Ecology and Evolution, 4, 754-759.

Revell, L. J. (2014) Graphical methods for visualizing comparative data on phylogenies. Chapter 4 in Modern phylogenetic comparative methods and their application in evolutionary biology: Concepts and practice (L. Z. Garamszegi ed.), pp. 77-103.

Revell, L. J. (2024) phytools 2.0: an updated R ecosystem for phylogenetic comparative methods (and other things). PeerJ, 12, e16505.

See Also

contMap, densityMap, multirateBM