R: Reorder edges of a '"simmap"' tree

reorderSimmap {phytools}

R Documentation

Reorder edges of a `"simmap"` tree

Description

Function returns a reordered modified "phylo" object by using reorder.phylo but then sorting the additional elements $mapped.edge and $maps to have the same order as $edge.

Usage

reorderSimmap(tree, order="cladewise", index.only=FALSE, ...)

Arguments

`tree`	a modified object of class `"phylo"`.
`order`	`"cladewise"`, `"pruningwise"`, or any other allowable order permitted by `reorder.phylo`.
`index.only`	logical value indicating whether only an index should be returned.
`...`	other arguments.

Value

A modified object of class "phylo".

Author(s)

Liam Revell liam.revell@umb.edu

References

Revell, L. J. (2024) phytools 2.0: an updated R ecosystem for phylogenetic comparative methods (and other things). PeerJ, 12, e16505.

Reorder edges of a "simmap" tree