fitThresh {phytools} | R Documentation |
Fits multi-state threshold model using the discrete approximation
Description
This function uses the discrete approximation of Boucher and Demery (2016) to fit a multi-state discrete character threshold model following Felsenstein (2012; Revell 2014).
Usage
fitThresh(tree, x, sequence=NULL, ...)
Arguments
tree |
object of class |
x |
a named vector. |
sequence |
assumed ordering of the discrete character state. If not supplied and then alphanumeric order is assumed. |
... |
optional arguments. |
Value
An object of class "fitThresh"
.
Author(s)
Liam Revell liam.revell@umb.edu
References
Boucher, F. C., and V. Demery (2016) Inferring bounded evolution in phenotypic characters from phylogenetic comparative data. Systematic Biology, 65, 651-661.
Felsenstein, J. (2012) A comparative method for both discrete and continuous characters using the threshold model. American Naturalist, 179, 145-156.
Revell, L. J. (2014) Ancestral character estimation under the threshold model from quantitative genetics. Evolution, 68, 743-759.
Revell, L. J. (2024) phytools 2.0: an updated R ecosystem for phylogenetic comparative methods (and other things). PeerJ, 12, e16505.
See Also
ancThresh
, bounded_bm
, fitmultiBM
, threshBayes