bd {phytools}

Convert object of class "birthdeath" to raw birth & death rates

Description

Converts an object of class "birthdeath" (from birthdeath) to a vector with the ML birth & death rates.

Usage

bd(x)

Arguments

x

object of class "birthdeath".

Details

This is now somewhat obsolete as phytools now contains functions to fit birth-death and pure-birth diversification models from trees (fit.bd and fit.yule) that also take into account incomplete sampling fraction.

Value

A vector.

Author(s)

Liam Revell [e-mail]

References

Revell, L. J. (2024) phytools 2.0: an updated R ecosystem for phylogenetic comparative methods (and other things). PeerJ, 12, e16505.

See Also

birthdeath, fit.bd, fit.yule