plot.phylosim {phylosignal} | R Documentation |
Plot phylosim
object
Description
This function plots a phylosim
object to visualize the behaviour of
phylogenetic signal statistics for a given phylogenetic tree
Usage
## S3 method for class 'phylosim'
plot(
x,
what = c("stat", "pval"),
stacked.methods = FALSE,
quantiles = c(0.05, 0.95),
col = 1:5,
legend = TRUE,
...
)
Arguments
x |
a |
what |
what to represent on the plot.
Can be the statistics used to measure the signal (" |
stacked.methods |
a logical. If different methods have been used, should they
be plotted on the same graphic ( |
quantiles |
a vector of two numeric values between 0 and 1
giving the minimum and the maximum quantiles to plot.
Set to |
col |
a vector of colors for the different methods. |
legend |
a logical. If |
... |
further arguments to be passed to or from other methods. |
See Also
Examples
## Not run:
data(navic)
psim <- phyloSim(navic)
plot(psim)
plot.phylosim(psim, what = "pval", stacked.methods = TRUE)
## End(Not run)
[Package phylosignal version 1.3.1 Index]