ladder {phylogram} | R Documentation |
Reorder tree branches in ladderized pattern.
Description
This function ladderizes the branches of a dendrogram
object
to aid in visual interpretation.
Usage
ladder(x, decreasing = FALSE)
Arguments
x |
an object of class |
decreasing |
logical indicating whether the tree should be ladderized upwards or downwards. Defaults to FALSE (downwards). |
Details
This function is the dendrogram
analogue of the
ladderize
function in the ape
package (Paradis et al 2004, 2012).
Value
Returns an object of class dendrogram
.
Author(s)
Shaun Wilkinson
References
Paradis E, Claude J, Strimmer K, (2004) APE: analyses of phylogenetics and evolution in R language. Bioinformatics 20, 289-290.
Paradis E (2012) Analysis of Phylogenetics and Evolution with R (Second Edition). Springer, New York.
See Also
The ladderize
function in the
ape
package performs a similar operation for objects
of class "phylo"
.
Examples
x <- read.dendrogram(text = "(A:0.1,B:0.2,(C:0.3,D:0.4):0.5);")
plot(x, horiz = TRUE)
x <- ladder(x, decreasing = TRUE)
plot(x, horiz = TRUE)
[Package phylogram version 2.1.0 Index]