| phylobubbles {phylobase} | R Documentation |
Bubble plots for phylo4d objects
Description
Plots either circles or squares corresponding to the magnitude of each cell
of a phylo4d object.
Usage
phylobubbles(
type = type,
place.tip.label = "right",
show.node.label = show.node.label,
rot = 0,
edge.color = edge.color,
node.color = node.color,
tip.color = tip.color,
edge.width = edge.width,
newpage = TRUE,
...,
XXYY,
square = FALSE,
grid = TRUE
)
Arguments
type |
the type of plot |
place.tip.label |
A string indicating whether labels should be plotted to the right or to the left of the bubble plot |
show.node.label |
A logical indicating whether internal node labels should be plotted |
rot |
The number of degrees that the plot should be rotated |
edge.color |
A vector of colors for the tree edge segments |
node.color |
A vector of colors for the coloring the nodes |
tip.color |
A vector of colors for the coloring the tip labels |
edge.width |
A vector of line widths for the tree edges |
newpage |
Logical to control whether the device is cleared before plotting, useful for adding plot inside other plots |
... |
Additional parameters passed to the bubble plotting functions |
XXYY |
The out put from the phyloXXYY function |
square |
Logical indicating whether the plot 'bubbles' should be squares |
grid |
A logical indicating whether a grey grid should be plotted behind the bubbles |
Author(s)
Peter Cowan pdc@berkeley.edu
See Also
phyloXXYY, treePlot
Examples
##---- Should be DIRECTLY executable !! ----
##-- ==> Define data, use random,
##-- or do help(data=index) for the standard data sets.