Project {pepr}

The constructor of a class representing a Portable Encapsulated Project

Description

This is a helper that creates the project with empty samples and config slots

Usage

Project(
  file = NULL,
  amendments = NULL,
  sampleTableIndex = NULL,
  subSampleTableIndex = NULL
)

Arguments

file

a string specifying a path to a project configuration YAML file

amendments

a string with the amendments names to be activated

sampleTableIndex

a string indicating the sample attribute that is used to index the sample table

subSampleTableIndex

a string indicating the sample attribute that is used to index the sample table

Value

an object of "Project"

Examples

projectConfig = system.file("extdata", "example_peps-master",
"example_amendments1", "project_config.yaml", package="pepr")
p=Project(projectConfig)