Pedigree Models

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Documentation for package ‘pedmod’ version 0.2.4

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

biconnected_components	Finds the Biconnected Components
biconnected_components_pedigree	Finds the Biconnected Components
block_cut_tree	Creates a Block-cut Tree Like Object
block_cut_tree_pedigree	Creates a Block-cut Tree Like Object
direct_to_standardized	Transform Between Parameterizations
eval_pedigree_grad	Approximate the Log Marginal Likelihood
eval_pedigree_hess	Approximate the Log Marginal Likelihood
eval_pedigree_ll	Approximate the Log Marginal Likelihood
max_balanced_partition	Finds an Approximately Balanced Connected Partition
max_balanced_partition_pedigree	Finds an Approximately Balanced Connected Partition
mvndst	Multivariate Normal Distribution CDF and Its Derivative
mvndst_grad	Multivariate Normal Distribution CDF and Its Derivative
pedigree_ll_terms	Get a C++ Object for Log Marginal Likelihood Approximations
pedigree_ll_terms_loadings	Get a C++ Object for Log Marginal Likelihood Approximations
pedmod_opt	Optimize the Log Marginal Likelihood
pedmod_profile	Computes Profile Likelihood Based Confidence Intervals
pedmod_profile_nleq	Computes Profile Likelihood Based Confidence Intervals for a Nonlinear Transformation of the Variables
pedmod_profile_prop	Computes Profile Likelihood Based Confidence Intervals for the Proportion of Variance
pedmod_sqn	Optimize the Log Marginal Likelihood Using a Stochastic Quasi-Newton Method
pedmod_start	Optimize the Log Marginal Likelihood
pedmod_start_loadings	Optimize the Log Marginal Likelihood
standardized_to_direct	Transform Between Parameterizations
unconnected_partition	Finds an Approximately Balanced Partition
unconnected_partition_pedigree	Finds an Approximately Balanced Partition