df2tree {pctax} | R Documentation |
From a dataframe to construct a phylo
Description
NOTE: this function will do before_tree
first.
Usage
df2tree(data, edge_df = FALSE)
Arguments
data |
dataframe |
edge_df |
if the data is edge_df ? |
Value
phylo object
Examples
data(otutab, package = "pcutils")
df2tree(taxonomy) -> tax_tree
print(tax_tree)
# check all nodes matched!
if (requireNamespace("picante")) {
picante::match.phylo.comm(tax_tree, t(otutab)) -> nn
nrow(nn$comm) == nrow(t(otutab))
}
[Package pctax version 0.1.1 Index]