pbat.work {pbatR}

pbatRwork Temp Directory

Description

Creates a temporary 'pbatRwork' directory, and moves to it. This can be created in the same directory as a pedigree or phenotype file by passing those as parameters instead.

Usage

pbat.work( pedOrPhe=NULL )
pbat.unwork( cur=NULL )

Arguments

pedOrPhe

If a ‘ped’ or ‘phe’ symbolic object (read in without ‘sym=TRUE’ which is the default), then uses that directory + '/pbatRwork' as the current working directory (so all output will go there). Otherwise it just creates a ‘pbatRwork’ directory in the current working directory.

cur

Pass in the output of pbat.work(...), see example below.

Examples

## Not run: 
ped <- read.ped("mydata")
phe <- read.phe("myphe")

cur <- pbat.work( ped )

res <- pbat.m(trait ~ NONE, ped=ped, phe=phe, fbat="gee")
...
## whatever you want to do with the results

pbat.unwork( cur ) ## sends you back to where you were

## End(Not run)