gset_list_from_gmt {pathfindR}

Retrieve Gene Sets from GMT-format File

Description

Retrieve Gene Sets from GMT-format File

Usage

gset_list_from_gmt(path2gmt, descriptions_idx = 2)

Arguments

path2gmt

path to the gmt file

descriptions_idx

index for descriptions (default = 2)

Value

list containing 2 elements:

• gene_sets - A list containing the genes involved in each gene set

• descriptions - A named vector containing the descriptions for each gene set