get_kegg_gsets {pathfindR}

Retrieve Organism-specific KEGG Pathway Gene Sets

Description

Retrieve Organism-specific KEGG Pathway Gene Sets

Usage

get_kegg_gsets(org_code = "hsa")

Arguments

org_code

KEGG organism code for the selected organism. For a full list of all available organisms, see https://www.genome.jp/kegg/catalog/org_list.html

Value

list containing 2 elements:

• gene_sets - A list containing KEGG IDs for the genes involved in each KEGG pathway

• descriptions - A named vector containing the descriptions for each KEGG pathway