| example_mmu_output {pathfindR.data} | R Documentation |
Example Output for Mus musculus - Myeloma Analysis
Description
A dataset containing the results of pathfindR's active-subnetwork-oriented
enrichment workflow performed on the Mus musculus myeloma
differential expression dataset example_mmu_input.
Generated on 27 Apr 2024.
Usage
example_mmu_output
Format
A data frame with 34 rows and 9 columns:
- ID
ID of the enriched term
- Term_Description
Description of the enriched term
- Fold_Enrichment
Fold enrichment value for the enriched term
- occurrence
the number of iterations that the given term was found to enriched over all iterations
- support
the median support (proportion of active subnetworks leading to enrichment within an iteration) over all iterations
- lowest_p
the lowest adjusted-p value of the given term over all iterations
- highest_p
the highest adjusted-p value of the given term over all iterations
- Up_regulated
the up-regulated genes in the input involved in the given term, comma-separated
- Down_regulated
the down-regulated genes in the input involved in the given term, comma-separated
See Also
example_mmu_input for the example mmu input.
run_pathfindR for details on the pathfindR enrichment workflow.