example_experiment_matrix {pathfindR.data}

Example Experiment Matrix for pathfindR - Enriched Term Scoring

Description

A matrix containing the log₂-transformed and quantile-normalized expression values of the differentially-expressed genes for 18 rheumatoid arthritis (RA) patients and 15 healthy subjects. The matrix contains expression values of 572 significantly differentially-expressed genes (see example_pathfindR_input) with adj.P.Val <= 0.05. Generated on 28 Sep 2019.

Usage

example_experiment_matrix

Format

A matrix with 572 rows and 33 columns.

Source

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE15573

See Also

example_pathfindR_input for the RA differentially-expressed genes data frame example_pathfindR_output for the RA example pathfindR enrichment output score_terms for details on calculating agglomerated scores of enriched terms