dongensMetric {partitionComparison}

Dongen's Metric

Description

Compute Dongen's metric

2n - \sum_{C \in P} \max_{D \in Q} |C \cap D| - \sum_{D \in Q} \max_{C \in P} |C \cap D|

Usage

dongensMetric(p, q)

## S4 method for signature 'Partition,Partition'
dongensMetric(p, q)

Arguments

p

The partition P

q

The partition Q

Methods (by class)

• dongensMetric(p = Partition, q = Partition): Compute given two partitions

Author(s)

Fabian Ball [e-mail]

References

van Dongen S (2000). “Performance Criteria For Graph Clustering And Markov Cluster Experiments.” Technical Report INS-R 0012, CWI.

See Also

projectionNumber

Examples

isTRUE(all.equal(dongensMetric(new("Partition", c(0, 0, 0, 1, 1)), 
                               new("Partition", c(0, 0, 1, 1, 1))), 2))