score.cells.puram {pagoda2}

Puram, Bernstein (Cell, 2018) Score cells as described in Puram, Bernstein (Cell, 2018)

Description

Puram, Bernstein (Cell, 2018) Score cells as described in Puram, Bernstein (Cell, 2018)

Usage

score.cells.puram(data, signature, correct = TRUE, show.plot = FALSE, ...)

Arguments

data

matrix of expression, rows are cell, columns are genes

signature

character vector The signature to evaluate, a character vector of genes

correct

boolean Perform background correction by getting a semi-random geneset (default=TRUE)

show.plot

boolean If corrected values are calculated show plot of corrected vs original scores (default=FALSE)

...

options for get.control.geneset()

Value

a score for each cell