read.10x.matrices {pagoda2}

Quick loading of 10X CellRanger count matrices

Description

Quick loading of 10X CellRanger count matrices

Usage

read.10x.matrices(matrixPaths, version = "V3", n.cores = 1, verbose = TRUE)

Arguments

matrixPaths

a single path to the folder containing matrix.mtx, genes.tsv and barcodes.tsv files, OR a named list of such paths

version

string Version of 10x output to read (default='V3'). Must be one of 'V2' or 'V3'.

n.cores

numeric Cores to utilize in parallel (default=1)

verbose

boolean Whether to output verbose output (default=TRUE)

Value

a sparse matrix representation of the data (or a list of sparse matrices if a list of paths was passed)