get.de.geneset {pagoda2}

Generate differential expression genesets for the web app given a cell grouping by calculating DE sets between each cell set and everything else

Description

Generate differential expression genesets for the web app given a cell grouping by calculating DE sets between each cell set and everything else

Usage

get.de.geneset(pagObj, groups, prefix = "de_")

Arguments

pagObj

pagoda object

groups

named factor to do the de by

prefix

chararcter Prefix to assign to genesets generated (default="de_")

Value

a 'pagoda2' web object