extendedP2proc {pagoda2}

Perform extended 'Pagoda2' processing. Generate organism specific GO environment and calculate pathway overdispersion.

Description

Perform extended 'Pagoda2' processing. Generate organism specific GO environment and calculate pathway overdispersion.

Usage

extendedP2proc(p2, organism = "hs")

Arguments

p2

the 'Pagoda2' object

organism

character Organisms hs (Homo Sapiens), mm (M. Musculus, mouse) or dr (D. Rerio, zebrafish) (default='hs')

Value

list of a 'Pagoda2' object and go.env