finalSet {ordinalbayes}R Documentation

Subset of The Cancer Genome Atlas Cervical Cancer HTSeq Data.

Description

This subset includes 2,009 transcripts and four phenotypic variables for 242 subjects with squamous cell cervical cancer.

Usage

finalSet

Format

The format is of formal class 'DESeqTransform' (package "DESeq2") with the following extractor functions:

assay

includes rld transformed transcript expression data

colData

includes phenotypic data: age_at_index, cigarettes_per_day, race, and Stage

Source

TCGAbiolinks TCGA-CESC

[Package ordinalbayes version 0.1.1 Index]