dictionary.annotate.harmo_status {opalr} | R Documentation |
Set variable annotation with Harmonization Status term
Description
Apply or remove an harmonization status annotation from a set of variables. The harmonization status is described by the "status" vocabulary in the "Mlstr_harmo" taxonomy.
Usage
dictionary.annotate.harmo_status(tibble, variables = NULL, status)
Arguments
tibble |
Tibble to be annotated. |
variables |
A character vector of variable names to be annotated. If NULL or empty, all the columns of the tibble will be annotated. |
status |
The harmonization status to apply: 'complete', 'undetermined', 'impossible' or 'na'. If NULL, the annotation will be deleted. |
Value
The annotated tibble
Examples
## Not run:
o <- opal.login('administrator','password', url='https://opal-demo.obiba.org')
cqx <- opal.table_get(o, "CPTP", "Cag_coreqx")
cqx <- dictionary.annotate.harmo_status(cqx,
variables = c("A_SDC_EDU_LEVEL", "A_SDC_EDU_LEVEL_AGE"),
status = "complete")
opal.logout(o)
## End(Not run)
[Package opalr version 3.4.1 Index]