| gene.info {oompaData} | R Documentation |
Gene information for the prostate cancer data set
Description
This data set provides information about the genes included with the (partial) prostate cancer data set as part of the tail.rank.test package.
Usage
data(gene.info)Format
A data frame with 2000 observations on the following 6 variables.
- ArrayI.Spot
a numeric vector; where is this clone spotted on the old arrays
- ArrayII.Spot
a numeric vector; where is this clone spotted on the new arrays
- Clone.ID
a factor; the IMAGE clone identifier
- Gene.Symbol
a factor; the official gene symbol
- Cluster.ID
a factor; the UniGene cluster number
- Accession
a factor; the GenBanlk accession number
Source
The data was originally described in the paper by Lapointe et al., and downloaded from the Stanford Microarray Database https://bio.tools/stanfordmicroarraydb. We randomly selected 2000 of the 42129 spots to include as demonstration data here.
References
Lapointe J et al. (2004) Gene expression profiling identifies clinically relevant subtypes of prostate cancer. Proc Natl Acad Sci U S A, 101, 811–816.
See Also
clinical.info,
expression.data
Examples
data(gene.info)
summary(gene.info)