path_hamming_over_trees_KDE {ontophylo}

Hamming distances for a list of trees

Description

Calculates hamming distances for all paths in each discretized tree of a list.

Usage

path_hamming_over_trees_KDE(tree.list)

Arguments

tree.list

multiSimmap object.

Value

A tibble with information on state changes, time spent on each state, edge IDs, absolute and normalized hamming distances for all edges and all trees in a list.

Author(s)

Sergei Tarasov

Examples

data("hym_stm_amalg")
# Get ten samples of stochastic maps from head.
tree_list <- hym_stm_amalg$head[1:10]
tree_list <- merge_tree_cat_list(tree_list)


  # Calculate hamming distances.
  ph <- suppressWarnings(path_hamming_over_trees_KDE(tree_list))
  ph