paramo.list {ontophylo}

Stack multiple discrete stochastic character map lists

Description

Performs the final stacking of maps for a set of stochastic character maps stored in a list.

Usage

paramo.list(cc, tree.list, ntrees = 1)

Arguments

cc

character. Characters IDs to stack.

tree.list

multiSimmap or multiPhylo object. Named list with stochastic character maps.

ntrees

integer. Number of trees to stack.

Value

A list of stacked stochastic character maps.

Author(s)

Sergei Tarasov

Examples

data("hym_stm")
# Select the first five characters.
tree_list <- hym_stm[1:5]
tree_list <- lapply(tree_list, function(x) discr_Simmap_all(x, res = 100))
tree_list_amalg <- paramo.list(names(tree_list), tree_list, ntrees = 50)
tree_list_amalg <- do.call(c, tree_list_amalg)
# Plot one amalgamated stochastic map.
phytools::plotSimmap(tree_list_amalg[[1]], get_rough_state_cols(tree_list_amalg[[1]]),  
lwd = 3, pts = FALSE,ftype = "off")