make_data_NHPP_KDE_Markov_kernel {ontophylo}

Get NHPP data for all edges (Markov KDE)

Description

Gets data on changing times between states for all edges of a given sample of trees for the Markov kernel density estimator (KDE).

Usage

make_data_NHPP_KDE_Markov_kernel(Tb.trees, add.psd = TRUE)

Arguments

Tb.trees

data.frame. A tibble obtained with the 'path_hamming_over_trees_KDE' function.

add.psd

logical. Whether to add pseudodata or not. Default is TRUE.

Value

A list with changing times between states for all edges of a given sample of trees.

Author(s)

Sergei Tarasov

Examples

data("hym_hm")
# Get hamming data from the head characters.
hm <- hym_hm$head
# Make NHPP path data.
nhpp <- make_data_NHPP_KDE_Markov_kernel(hm)
# Check NHPP path data for an arbitrary branch.
nhpp[[5]]