| hym_stm_mds {ontophylo} | R Documentation |
Hymenoptera amalgamated phenome
Description
Example of a stochastic character map obtained from the amalgamation of 394 characters modified from the matrix of Sharkey et al. (2011) and using the tree from Klopfstein et al. (2013). The tree was dated using penalized likelihood as implemented in TreePL (Smith & O’Meara, 2012). This data object is used to run the examples of the ontophyo morphospace application.
Usage
hym_stm_mds
Format
An stochastic character map of class "simmap".
References
Sharkey, M.J., et al. 2011. Phylogenetic relationships among superfamilies of Hymenoptera. Cladistics 28(1), 80-112. (doi:10.1111/j.1096-0031.2011.00366.x)
Klopfstein, S., Vilhelmsen, L., Heraty, J.M., Sharkey, M. & Ronquist, F. (2013) The hymenopteran tree of life: evidence from protein-coding genes and objectively aligned ribosomal data. PLoS One, 8, e69344. (doi:10.1371/journal.pone.0069344)
Examples
data(hym_stm_mds)