colour_by_population_frequency {ontologyPlot} | R Documentation |
Function to assign colours to terms based on population frequency of terms
Description
Function to assign colours to terms based on population frequency of terms
Usage
colour_by_population_frequency(
ontology,
terms,
frequencies,
colour_palette = colorRampPalette(c("Yellow", "Green", "#0099FF"))(10),
max_colour_freq = max(terms_freq),
min_colour_freq = min(terms_freq)
)
Arguments
ontology |
|
terms |
Character vector of ontological terms |
frequencies |
Numeric vector of term frequencies named by term IDs |
colour_palette |
Character vector of colours for the different information contents of the terms to be plotted, going from rare to common |
max_colour_freq |
Numeric value in [0, 1] giving the maximum frequency (to which the dullest color will be assigned) |
min_colour_freq |
Numeric value in [0, 1] giving the minimum frequency (to which the brightest color will be assigned) |
Value
Character vector of colours, named by term
See Also
colour_by_term_set
, colour_by_frequency
[Package ontologyPlot version 1.7 Index]