| vcf_example_riself {onemap} | R Documentation |
Data generated from VCF file with biallelic markers from a RIL population produced by selfing
Description
Simulated biallelic data set for an ri self population.
Usage
data("vcf_example_riself")Format
The format is: List of 10 $ geno : num [1:92, 1:25] 3 3 1 3 1 3 3 1 3 1 ... ..- attr(*, "dimnames")=List of 2 .. ..$ : chr [1:92] "ID1" "ID3" "ID4" "ID5" ... .. ..$ : chr [1:25] "SNP16" "SNP12" "SNP17" "SNP10" ... $ n.ind : int 92 $ n.mar : int 25 $ segr.type : chr [1:25] "A.B" "A.B" "A.B" "A.B" ... $ segr.type.num: logi [1:25] NA NA NA NA NA NA ... $ n.phe : int 0 $ pheno : NULL $ CHROM : chr [1:25] "1" "1" "1" "1" ... $ POS : int [1:25] 1791 6606 9001 11326 11702 15533 17151 18637 19146 19220 ... $ input : chr "vcf_example_riself.raw" - attr(*, "class")= chr [1:2] "onemap" "riself"
Details
A total of 92 rils individuals were genotyped with 25 markers. The data
was generated from a VCF file. It contains chromossome and position
informations for each marker. It is included to be used as a example in
order to understand how to convert VCF file to OneMap input data with the functions
vcf2raw and onemap_read_vcfR.
Author(s)
Cristiane Hayumi Taniguti, chaytaniguti@gmail.com
See Also
read_onemap for details about objects of class
onemap.
Examples
data(vcf_example_riself)
plot(vcf_example_riself)