R: Extract marker number by name

seq_by_type {onemap}

R Documentation

Extract marker number by name

Extract marker number by name

seq_by_type(sequence, mk_type)

`sequence`	object of class or sequence
`mk_type`	vector of character with marker type to be selected

New sequence object of class sequence with selected marker type, which is a list containing the following components:

`seq.num`	a `vector` containing the (ordered) indices of markers in the sequence, according to the input file.
`seq.phases`	a `vector` with the linkage phases between markers in the sequence, in corresponding positions. `-1` means that there are no defined linkage phases.
`seq.rf`	a `vector` with the recombination frequencies between markers in the sequence. `-1` means that there are no estimated recombination frequencies.
`seq.like`	log-likelihood of the corresponding linkage map.
`data.name`	object of class `onemap` with the raw data.
`twopt`	object of class `rf_2pts` with the 2-point analyses.

Cristiane Taniguti, chtaniguti@tamu.edu