seq_by_type {onemap}R Documentation

Extract marker number by name

Description

Extract marker number by name

Usage

seq_by_type(sequence, mk_type)

Arguments

sequence

object of class or sequence

mk_type

vector of character with marker type to be selected

Value

New sequence object of class sequence with selected marker type, which is a list containing the following components:

seq.num

a vector containing the (ordered) indices of markers in the sequence, according to the input file.

seq.phases

a vector with the linkage phases between markers in the sequence, in corresponding positions. -1 means that there are no defined linkage phases.

seq.rf

a vector with the recombination frequencies between markers in the sequence. -1 means that there are no estimated recombination frequencies.

seq.like

log-likelihood of the corresponding linkage map.

data.name

object of class onemap with the raw data.

twopt

object of class rf_2pts with the 2-point analyses.

Author(s)

Cristiane Taniguti, chtaniguti@tamu.edu

See Also

make_seq


[Package onemap version 3.0.0 Index]