find_bins {onemap} | R Documentation |
Allocate markers into bins
Description
Function to allocate markers with redundant information into bins. Within each bin, the pairwise recombination fraction between markers is zero.
Usage
find_bins(input.obj, exact = TRUE)
Arguments
input.obj |
an object of class |
exact |
logical. If |
Value
An object of class onemap_bin
, which is a list containing the
following components:
bins |
a list containing the bins. Each element of the list is a table whose lines indicate the name of the marker, the bin in which that particular marker was allocated and the percentage of missing data. The name of each element of the list corresponds to the marker with the lower amount of missing data among those on the bin |
n.mar |
total number of markers. |
n.ind |
number individuals |
exact.search |
logical; indicates if
the search was performed with the argument |
Author(s)
Marcelo Mollinari, mmollina@usp.br
See Also
Examples
data("vcf_example_out")
(bins<-find_bins(vcf_example_out, exact=FALSE))