R: Add the redundant markers removed by create_data

add_redundants {onemap}

R Documentation

Add the redundant markers removed by create_data_bins function

Add the redundant markers removed by create_data_bins function

add_redundants(sequence, onemap.obj, bins)

`sequence`	object of class `sequence`
`onemap.obj`	object of class `onemap.obj` before redundant markers were removed
`bins`	object of class `onemap_bin`

New sequence object of class sequence, which is a list containing the following components:

`seq.num`	a `vector` containing the (ordered) indices of markers in the sequence, according to the input file.
`seq.phases`	a `vector` with the linkage phases between markers in the sequence, in corresponding positions. `-1` means that there are no defined linkage phases.
`seq.rf`	a `vector` with the recombination frequencies between markers in the sequence. `-1` means that there are no estimated recombination frequencies.
`seq.like`	log-likelihood of the corresponding linkage map.
`data.name`	object of class `onemap` with the raw data.
`twopt`	object of class `rf_2pts` with the 2-point analyses.

Cristiane Taniguti, chtaniguti@tamu.edu