KEGG_gather {omu} | R Documentation |
Gather metadata from KEGG for metabolites
Description
Method for gathering metadata from the KEGG API.
Usage
KEGG_gather(count_data)
## S3 method for class 'cpd'
KEGG_gather(count_data)
## S3 method for class 'rxn'
KEGG_gather(count_data)
## S3 method for class 'KO'
KEGG_gather(count_data)
Arguments
count_data |
A metabolomics count dataframe with a KEGG identifier columns |
Examples
## Not run:
count_data <- assign_hierarchy(count_data = c57_nos2KO_mouse_countDF,
keep_unknowns = TRUE, identifier = "KEGG")
count_data <- subset(count_data, Subclass_2=="Aldoses")
count_data <- KEGG_gather(count_data = count_data)
## End(Not run)
[Package omu version 1.1.2 Index]