GSE79262small {omicwas} | R Documentation |
Small Subset of GSE79262 Dataset From GEO
Description
The dataset includes 53 samples. A subset of 737 CpG sites and 3624 SNPs within Chr1:100,000,000-110,000,000 were selected from the original EWAS dataset. DNA methylation was measured in T cells. The estimated proportion of CD4T, CD8T, NK cells are saved in W.
Usage
data(GSE79262small)
Format
An object of class list
of length 6.
Source
See Also
ctcisQTL
Examples
data(GSE79262small)
X = GSE79262small$X
Xpos = GSE79262small$Xpos
W = GSE79262small$W
Y = GSE79262small$Y
Ypos = GSE79262small$Ypos
C = GSE79262small$C
X = X[seq(1, 3001, 100), ] # for brevity
Xpos = Xpos[seq(1, 3001, 100)]
Y = Y[seq(1, 501, 100), ]
Ypos = Ypos[seq(1, 501, 100)]
ctcisQTL(X, Xpos, W, Y, Ypos, C = C)
[Package omicwas version 0.8.0 Index]