| toy_outbreak_short {o2geosocial} | R Documentation |
Simulated outbreaks
Description
Second dataset used to illustrate o2geosocial. (toy_outbreak_short) is a
smaller data set (75 cases), spread across different Census tracks in Ohio
(population and location of each region taken from
https://www.census.gov/geographies/reference-files/2010/geo/2010-centers-population.html).
The list contains the following:
Usage
toy_outbreak_short
Format
An object of class list of length 3.
Details
-
$cases: A data table summarising the epidemiological features of the 75 cases. It contains the ID, state, onset date, genotype, Census tract, age group, import status, cluster, generation and infector of the cases. -
$dt_regions: A data table containing the ID, population, longitude and latitude of each region. Should be used to compute the distance matrix, using the package geosphere. -
$age_contact: A matrix indicating the number of contacts between age groups
Author(s)
Alexis Robert alexis.robert@lshtm.ac.uk
Examples
data("toy_outbreak_short")
names(toy_outbreak_short)
toy_outbreak_short