| toy_outbreak_long {o2geosocial} | R Documentation |
Simulated outbreaks
Description
We generated two datasets used to illustrate o2geosocial.
The first one (toy_outbreak_long) contains 1,940 cases, from simulated outbreaks
nationwide between 2010 and 2017. The list contains the following:
Usage
toy_outbreak_long
Format
An object of class list of length 3.
Details
-
$cases: A data table summarising the epidemiological features of the 1,940 cases. It contains the ID, State, onset date, genotype, county, age group, import status, cluster, generation and infector of the cases. -
$dt_regions: A data table containing the ID, population, longitude and latitude of each region. Should be used to compute the distance matrix, using the package geosphere. -
$age_contact: A matrix indicating the number of contacts between age groups
Author(s)
Alexis Robert alexis.robert@lshtm.ac.uk
Examples
data("toy_outbreak_long")
names(toy_outbreak_long)
toy_outbreak_long