pre_clustering {o2geosocial} | R Documentation |
Pre cluster cases in groups according using the genotypes and the arbitrary thresholds gamma (spatial) and delta (temporal).
Description
This function updates the clusters and the initial tree in the lists data and config
Usage
pre_clustering(data, config)
Arguments
data |
A list of data items as returned by |
config |
A list of settings as returned by |
Value
A named list containing two components $data
and
$config
. data
data items as returned by outbreaker_data
.
config
is a list of settings as returned by create_config
.
Author(s)
Alexis Robert (alexis.robert@lshtm.ac.uk)
[Package o2geosocial version 1.1.3 Index]