plot_sc_tree {numbat} | R Documentation |
Plot single-cell smoothed expression magnitude heatmap
Description
Plot single-cell smoothed expression magnitude heatmap
Usage
plot_sc_tree(
gtree,
label_mut = TRUE,
label_size = 3,
dot_size = 2,
branch_width = 0.5,
tip = TRUE,
tip_length = 0.5,
pal_clone = NULL
)
Arguments
gtree |
tbl_graph The single-cell phylogeny |
label_mut |
logical Whether to label mutations |
label_size |
numeric Size of mutation labels |
dot_size |
numeric Size of mutation nodes |
branch_width |
numeric Width of branches in tree |
tip |
logical Whether to plot tip point |
tip_length |
numeric Length of the tips |
pal_clone |
named vector Clone colors |
Value
ggplot A single-cell phylogeny with mutation history labeled
Examples
p = plot_sc_tree(phylogeny_example)
[Package numbat version 1.4.0 Index]