cnv_heatmap {numbat} | R Documentation |
Plot CNV heatmap
Description
Plot CNV heatmap
Usage
cnv_heatmap(
segs,
var = "group",
label_group = TRUE,
legend = TRUE,
exclude_gap = TRUE,
genome = "hg38"
)
Arguments
segs |
dataframe Segments to plot. Need columns "seg_start", "seg_end", "cnv_state" |
var |
character Column to facet by |
label_group |
logical Label the groups |
legend |
logical Display the legend |
exclude_gap |
logical Whether to mark gap regions |
genome |
character Genome build, either 'hg38' or 'hg19' |
Value
ggplot Heatmap of CNVs along the genome
Examples
p = cnv_heatmap(segs_example)
[Package numbat version 1.4.0 Index]