find.spots.folder {nucim}

Detects spots

Description

Detects spots

Usage

find.spots.folder(
  f,
  color,
  thresh = 1,
  thresh.auto = TRUE,
  filter = NULL,
  cores = 1
)

Arguments

f

path to folder

color

which color, images have to be in folder with color name

thresh

threshold

thresh.auto

Logical. Find threshold automatically?

filter

2d-filter to use before spot detection

cores

number of cores to use in parallel (with parallel package only)

Value

spot images in spot-color/, number of spots as txt files in spot-color/