dapimask {nucim}

Mask DAPI in kernel

Description

Mask DAPI in kernel

Usage

dapimask(
  img,
  size = NULL,
  voxelsize = NULL,
  thresh = "auto",
  silent = TRUE,
  cores = 1
)

Arguments

img

DAPI channel image (3d)

size

size of img in microns

voxelsize

size of voxel in microns

thresh

threshold for intensity. Can be "auto": function will try to find automatic threshold

silent

Keep silent?

cores

number of cores available for parallel computing

Value

mask image, array with same dimension as img.