dapimask.file {nucim}

Automatic DAPI mask segmentation for files

Description

Automatic DAPI mask segmentation for files

Usage

dapimask.file(
  file,
  folder = "blue",
  voxelsize = NULL,
  size = NULL,
  silent = FALSE,
  cores = 1
)

Arguments

file

file to read

folder

with

voxelsize

real size of voxel (in microns), if NULL (default), look in folder XYZmic

size

real size of image (in microns), if NULL (default), look in folder XYZmic

silent

Keep silent?

cores

Number of cores available for parallel computing

Value

nothing, DAPI mask image will be saved to dapimask/